ethidium
Noun
Meaning
ethidium (uncountable)
(organic chemistry) The cationic form of a polycyclic aromatic base, name 3,8-Diamino-5-ethyl-6-phenylphenanthridinium, whose bromide is used as a stain for nucleic acids
Examples
Applications An agarose gel with bands of DNA stained with ethidium bromide and visualized under UV light on a UV Transilluminator.
Digital image of 3 plasmid restriction digests run on a 1% w/v agarose gel, 3 volt/cm, stained with ethidium bromide.
Intercalated ethidium is in a hydrophobic environment when it is between the base pairs of the DNA, protected from quenching by water which is excluded from the local environment of the intercalated ethidium.
Intercalation between bases The planar structure of chemicals such as ethidium bromide and proflavine allows them to insert between bases in DNA.
Staining and visualization The gel with UV illumination: DNA stained with ethidium bromide appears as glowing orange bands.
The ethidium bromide may be added to the agarose solution before it gels, or the DNA gel may be stained later after electrophoresis.